#!/bin/bash
# simple TORQUE/PBS job script to run program my_prog 

# set default resource requirements for job
# - these can be overridden on the qsub command line (this is for a 4 hour job)
#PBS -l walltime=4:00:00

# Change to directory from which job was submitted.
# (The actual name is held in the PBS environment variable $PBS_O_WORKDIR)
cd $PBS_O_WORKDIR

# Run my_prog taking input from file inputfile and sending output to outputfile
my_prog < inputfile > outputfile