Correlative Imaging Forum is an open discussion platform that brings together research staff from the Biomedical Imaging Unit (BIU) and the μ-VIS X-Ray Imaging Centre working on correlative imaging.
The meetings are organised by Dr. Orestis Katsamenis (coordinator), Dr Philipp Schneider and Dr. Peter Lackie and take place biweekly. Meeting sites alternate between BIU (University Hospital Southampton) and μ-VIS (Highfield Campus) to allow researchers for other groups based on either campuses to participate.
Discussions are focused on technical issues and application areas related to correlative imaging, including latest developments in imaging and image processing as well as potential funding opportunities and conference calls. The forum provides an opportunity for students and academics to discuss, troubleshoot and receive feedback on their ongoing projects, and to enlarge their professional network at the University.
| Date | Venue | Presenter | Topic |
| 27 May 2021 | online | Marie Zdora | Virtual histology using X-ray speckle-based phase tomography |
| 13 May 2021 | online | Alex Searle-Barnes | Evolutionary development of planktic foraminifera |
| 29 April 2021 | Online | speaker canceled | - |
| 15 April 2021 | Online | Elaine Ho | GaussQuality: an objective, user-friendly tool for assessing 3D X-ray micro-computed tomography image quality with Gaussian Mixture Models |
| 01 April 2021 | Online | Shelley Rawson | MicroCT of changes within tissues |
| 18 March 2021 | Online | Harry Rossides | Development of 3D X-ray phase-contrast Imaging and Analysis Tools for Tubular and Branching Structures with Applications in Colorectal Cancer Research |
| 04 March 2021 | Online | Phil Basford | Introducing the new Dectris detector |
| 18 February 2021 | Online | Rohan Lewis / Shelley Harris | multisclae imaging of the placenta |
| 04 February 2021 | Online | Rebecca Summerfield | Automated analysis of 3D human anatomy using Disior’s Bonelogic: how far can we go? |
| 21 January 2021 | Online | Elena Konstantinopoulou | R programming course |
| 07 January 2021 | Online | Kamil Sosinski | Correlative imaging software development (IP) |
| Christmas break | Online | ||
| 10 December 2020 | Online | Phil Basford | Introducing the new Dectris detector |
| 26 November 2020 | Online | Elizabeth Morris | Treatment from the inside: Optimisation of bone marrow transplants |
| 12 November 2020 | Online | Ronan Smith | Speckle-based imaging |
| 29 October 2020 | Online | David S Chatelet | VR tools for 360o tours and facility walk-throughs |
| 15 October 2020 | Online | Orestis Katsamenis | Automatic sample changer for high throughput X-ray Histology |
| 01 October 2020 | Online | Scheduling next talks | open |
| 17 September 2020 | Online | Orestis Katsamenis | Dual Energy microCT |
| 03 September 2020 | Online | ToScA presenters | ToScA2020 (web-conference): Test-run and feedback |
| 20 August 2020 | Online | Sharif Ahmed | DIAD: A new Dual Imaging And Diffraction beamline at Diamond |
| 06 August 2020 | Online | Elaine Ho | Registration and visualisation workflow for correlative microCT and histology |
| 23 July 2020 | Online | canceled (speaker unable to attend) | - |
| 09 July 2020 | Online | Elena Konstantinopoulou | Fast μCT scanning: confidence in concept for intraoperative use |
| 25 June 2020 | Online | Harry Rossides | 3D cyclorama Fiji/ImageJ plugin for digital unrolling of deformed tubes: Feedback and testers needed! |
| 11 June 2020 | Online | David S Chatelet | Deep learning -based segmentation in ORS Dragonfly |
| 28 May 2020 | online | Elaine Ho | Interactive visualisation of correlative microCT + histology images |
| 14 May 2020 | online | Orestis Katsamenis & David Chatelet | Working with microscopy and volume data from home - remote access to UoS equipment |
| 30 April 2020 | online | Orestis Katsamenis | Forum restart online; [a] testing the infrastructure & [b] next speakers line up |
| 16 April 2020 | BIU | canceled (COVID-19 lockdown) | - |
| 02 April 2020 | μ-VIS | canceled (COVID-19 lockdown) | - |
| 19 March 2020 | BIU | canceled (COVID-19 lockdown) | - |
| 05 March 2020 | μ-VIS | canceled (UCU ind. action) | - |
| 20 February 2020 | BIU | canceled (UCU ind. action) | - |
| 06 February 2020 | μ-VIS | David S Chatelet | GPU-acceleration in Fiji/ImageJ |
| 23 January 2020 | BIU | Bethany Harding | Enhancing the benefits and effectiveness of Novamin for dentin hypersensitivity and remineralisation of dental tissues |
| 09 January 2020 | μ-VIS | Harry Rossides | 3D morphometric quantification of binary images: A trip from ImageJ, BoneJ and MorphoLibJ to Python, Pandas and Jupyter. |
| Christmas break | BIU | ||
| 12 December 2019 | μ-VIS | speaker canceled | - |
| 28 November 2019 | BIU | canceled (UCU ind. action) | - |
| 14 November 2019 | μ-VIS | Jenny Pearson-Farr | Progress of endometrial cilia 3D analysis |
| 31 October 2019 | BIU | Vito Mennella | A short introduction on Vito's research portfolio |
| 17 October 2019 | μ-VIS | Elena Konstantinopoulou | syGlass software trial - VR visualisation of CT data |
| 03 October 2019 | BIU | Orestis Katsamenis | Everyone - round table discussion about users' experience using Dragonfly on IRIDIS visualisation cluster |
| 19 September 2019 | μ-VIS | Elaine Ho | summary of Dragonfly Workshop that took place on the 1st day of ToScA conference at So'ton |
| Summer break | |||
| 11 July 2019 | BIU | Phil Basford | GitHub and version control |
| 27 June 2019 | μ-VIS | Artur Kirjakulov | Augmented reality for interactive poster presentations: examples on EM and CARS imaging |
| 13 June 2019 | BIU | Marco Curto | Multi-material 3D Printing of Bioinspired Mechanical Architectures |
| 30 May 2019 | μ-VIS | Orestis Katsamenis | Internal software development: scripting and workflows repo |
| 16 May 2019 | μ-VIS | Elena Konstantinopoulou | Host-Pathogen interaction in tuberculosis by bioelectrospray 3D cell culture modelling and label-free Imaging |
| 02 May 2019 | μ-VIS | Patrica Goggin | Stained bone imaging and Image processing for segmantation and analysis - proress update |
| Easter break | |||
| 04 April 2019 | μ-VIS | Matt Lawson | Progress update on methodology for automatic registration of Histology on μCT |
| 21 March 2019 | BIU | Jenny Pearson-Farr | Analysis of ciliated cells of the human endometrium |
| 07 March 2019 | μ-VIS | Elaine Ho | Introduction of PhD project - 3D X-ray Histology for Soft Tissue Imaging |
| 21 February 2019 | BIU | David Chatelet | 3D data visualisation and analysis Draginfly v4.0 - Software assesment |
| 07 February 2019 | μ-VIS | Hannah Paul | Analysis of 3D tructure of D11B-positive Dendritic cells (DCs) |
| 24 January 2019 | BIU | Steph Robinson | Automatic segmentation of DAB stained lymphatics - discussion on tissue preparation that keeps the native lung structure |
| 10 January 2019 | μ-VIS | Orestis Katsamenis | Feedback, planning & open floor |
| Christmas break | |||
| 13 December 2018 | μ-VIS | Harry Rossides | The role of X-ray refraction in image formation: An overview of absorption and phase contrast CT imaging techniques |
| 29 November 2018 | BIU | Suzanne Brooks | Correlative imaging work flows involving lightsheet microscopy |
| 15 November 2018 | μ-VIS | Matt Lawson, David Chatelet | Using IRIDIs supercomputer - Experience so far… |
| 01 November 2018 | BIU | Orestis Katsamenis | Helical scanning - preliminary data & Open floor |
| 18 October 2018 | μ-VIS | Thomas Clark | Correlative neutron & CT imaging of plant roots |
| 04 October 2018 | BIU | Patrica Goggin | Stained bone imaging and Image processing for segmantation and analysis |
| 06 September 2018 | BIU | Beth Broadbent | Fast intraoperative μCT imaging of biopsy samples - MSc project |
| Summer break | |||
| 12 July 2018 | BIU | Matt Lawson | Elastic registration of histological images to μCT volume data |
| 28 June 2018 | μ-VIS | Harry Rossides | Cyclorama algorithm |
| 14 June 2018 | BIU | Orestis Katsamenis | Kick-off session |