Research group

BiOmics

Bar coded DNA sample

Technological advances have allowed scientists to gather large amounts of data about a vast array of species, organisms and single cells. Our researchers are using mathematical modelling, machine learning and other algorithms to extract information and patterns from large data sets to further our understanding of disease.

About

Contemporary scientific research benefits from rapid technological developments that enable the characterisation and quantification of biological molecules at unprecedented scale. Scientists can generate vast data that provide insight into the complex interplay of molecules within organisms. Interrogation and interpretation of these data inform the structure, function and interaction of molecules over time. 

We use ‘Omic technologies comprehensively to evaluate DNA (genomics), RNA (transcriptomics) and proteins (proteomics). We study small molecules using metabolomics. Microorganisms are investigated in a targeted manner using microbiomics or more broadly to characterise mixed samples using metagenomics.

At the University of Southampton, we generate vast datasets using these approaches across a wide range of environments and species. We work closely with NHS partners to use these capabilities to understand human disease and inform its clinical management. We bring together medical and biological scientists with mathematicians, computer and data scientists to develop and apply methods that exploit these data to their fullest potential.

From analysing patient genomes, to carrying out metagenomic analysis of water samples to using mass spectrometry metabolic profiling techniques, our scientists are studying the unique processes that take place within cells that can lead to disease or poor health outcomes in humans and help track changes in the environment.   

We are using data to answer clinical questions in areas such as cancer, autoimmune and respiratory diseases with the help of clinical colleagues we are translating our findings into novel techniques for clinicians to treat their patients, make predictions about prognosis and drug responsiveness.

Our researchers collaborate with partners at:

Research highlights

People, projects and publications

People

Dr Jack Lawrence

Senior Research Fellow
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Mr Jack Stubbs MSci

Research interests

  • Natural products biosynthesis: a complex cascade of catalytic steps in vitamin B6 biosynthesis is characterised by structures or reaction intermediates in the large PLP synthase complex
  • Time-resolved serial crystallography: experiments using microcrystals at room temperature, performed at synchrotrons and XFELs
  • Droplet microfluidics: producing homogenous microcrystal slurries for serial experiments
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Dr James Ashton

Associate Professor

Research interests

  • Inflammatory Bowel Disease
  • Paediatrics
  • Big Data

Accepting applications from PhD students

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Professor James Batchelor

Associate Dean International

Research interests

  • Public Health / Health Systems
  • Clinical Research Infastrcuture
  • Clinical Informatics / Health Infromatics

Accepting applications from PhD students

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Dr James Faulkner

Associate Professor

Research interests

  • Development and implementation of physical activity and exercise interventions for primary and secondary prevention of health conditions
  • Management of long-term conditions and multimorbidity
  • Translating basic and applied science into public health outcomes

Accepting applications from PhD students

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Dr James Gavin

Lecturer

Research interests

  • Musculoskeletal conditions
  • Physical activity
  • Self-management

Accepting applications from PhD students

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Dr Jan Janouskovec PhD

Lecturer in Ecology

Research interests

  • Marine phytoplankton and parasites
  • Symbiotic interactions
  • Biodiversity, evolution and genomics

Accepting applications from PhD students

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Professor Jana Kreppner

Professor

Research interests

  • Jana's work focusses on the impact of early experience on development. She is particularly interested in the role of relationship experiences, especially caregiver-child and peer/friend relationships, in typical and atypical development. Jana studies factors that influence relationship experiences as well as the effects and correlates of such relationship experiences on children’s development. Jana uses this knowledge to inform the development of relationship-based interventions to promote children and young people’s wellbeing. Her research has been funded by the ESRC, NIHR, the Waterloo Foundation and the Welcome Trust. Jana's research uses both quantitative and qualitative methods. She has extensive experience conducting longitudinal research across childhood, adolescence and young adulthood. Jana is currently involved in a range of interdisciplinary collaborations which span Psychiatry, Paediatric Neurology, Psychology, Education, Social Work, Public Policy, and Law.
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Dr Jane Cleal PhD

Associate Professor

Research interests

  • Areas of Scientific Expertise:
  • Reproductive Cell Biology – Fundamental mechanisms of cell biology in placenta and endometrium and the impact on the intra-uterine environment, fetal development and lifelong health.Regulation of Reproductive Cell Biology – Maternal exposures and molecular regulation of cellular gene expression, phenotype and function in placenta and endometrium and the clinical translation.Disease/phenotype – Fetal growth, Obesity, Cardiometabolic programming, Subfertility, Recurrent pregnancy loss.Cellular mechanisms – Membrane transport, endocytosis, vesicular transport & signalling, gene transcription, microRNA biology, epigenetic regulation.Vitamin D - Transport, regulation, metabolism and signalling.

Accepting applications from PhD students

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Sarah Ennis
Professor of Genomics
We are at a very exciting time in Life Science Research. The potential for novel discovery using ‘omics technologies combined with the computer science methodologies is immense.

Related research institutes, centres and groups

Related research institutes, centres and groups

Contact us

Contact us

Contact the Institute for Life Sciences team by emailing: